cv
Basics
Name | Vidya Vuruputoor |
Label | Genomics Researcher |
vsv AT uconn DOT edu | |
Url | https://vidsvur.github.io/ |
Summary | Plant conservation genomics with interest in improving genome assembly and annotation. HWA 👎. |
Work
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2024.01 - 2024.05 Graduate Teaching Assistant
Department of Ecology and Evolutionary Biology, University of Connecticut
Helped teach the basics of R and Python programming during the course EEB4100- Big Data Science for Biologists- a class open for undergraduates and graduate students
- R, Python, Linux programming, Transcriptome assembly
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2021.01 - 2025.07 Graduate Research Assistant
Department of Ecology and Evolutionary Biology, University of Connecticut
I am currently a PhD candidate at the University of Connecticut, leading a research project to find ways to conserve the Eastern Hemlock, a native tree species that an invasive insect, the hemlock wooly adelgid, currently threatens.
- Conservation biology, Host and plant interactions, Conifer genome assembly and annotation
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2020.01 - 2020.09 Content Writer
XCode Life Sciences
I created articles that focus on the genetic factors behind various traits- like effect of genes on exercise and recovery, building immunity, diseases like rosacea and hereditary hemochromatosis.
- Content writing, Biology
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2019.05 - 2019.10 Genetics Intern
Dümmen Orange
As a part of my internship at Dümmen Orange, I looked into the genome annotations of 'Old Blush' (Raymond et al., Saint-Oyant et al.) for resistance genes. Based on their descriptions, BLAST, comparison to other Rosaceae species, as well as selection pressure statistics (nucleotide diversity, ka/ks, fixation index, and Tajima's D); it was possible to narrow down potential R genes to a few genes that may have a function in conferring resistance to pathogens. This project was done using R.
- Disease resistance genes, roses, plant breeding, R
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- Present Biology and Chemistry teacher- Contract
National Academy of Learning
Took biology classes for 5th to 8th grade students. Took chemistry classes for 11th graders.
- Chemistry, Biology
Volunteer
Education
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2021.01 - 2025.08 Storrs, Connecticut
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2017.09 - 2019.11 Wageningen, NL
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2013.09 - 2017.05 Vellore, Tamil Nadu, India
Publications
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2024.03.23 -
2023.08.08 Welcome to the big leaves: Best practices for improving genome annotation in non-model plant genomes
Applications in Plant Science
Awards
- 2024
Ronald Bamford Grant
University of Connecticut
$1500 towards participating in the North American Forest Genetics Society conference in July of 2024.
- 2024
Rednalis Award
University of Connecticut
$6000 towards assessing transcriptomes across hemlock species to assess the molecular mechanisms underlying genetic defense to stressors.
- 2024
Graduate Student Research Award
New England Botanical Society
$1500 towards assessing transcriptomes across hemlock species to assess the molecular mechanisms underlying genetic defense to stressors.
- 2024
Sargant Award
Arnold Arboretum- Harvard University
$8500 towards generating the first reference genome of _Tsuga canadensis_ and assessing transcriptomes across hemlock species to assess the molecular mechanisms underlying genetic defense to stressors.